山口 諒 / Ryo Yamaguchi

*De-Kayne, R., Schley, R., Barth, J. M. I., Campillo, L. C., Chaparro-Pedraza, C., Joshi, J., Salzburger, W., Van Bocxlaer, B., Cotoras, D. D., Fruciano, C., Geneva, A. J., Gillespie, R., Heras, J., Koblmüller, S., Matthews, B., Onstein, R. E., Seehausen, O., Singh, P., Svensson, E. I., Salazar-Valenzuela, D., Vanhove, M. P. M., Wogan, G. O. U., Yamaguchi, R., Yoder, A. D., Cerca, J. 2024. Why Do Some Lineages Radiate While Others Do Not? Perspectives for Future Research on Adaptive Radiations. Cold Spring Harbor Perspectives in Biology a041448.
 

*Stankowski, S., Cutter, A. D., Satokangas, I., Lerch, B. A., Rolland, J., Smadja, C. M., Marzal, J. C. S., Cooney, C. R., Feulner, P. G. D., Domingos, F. M. C. B., North, H. L., Yamaguchi, R., Butlin, R. K., Wolf, J. B. W., Coughlan, J., Heidbreder, P., Hernández-Gutiérrez, R., Barnard-Kubow, K. B., Peede, D., Rancilhac, L., Salvador, R. B., Thompson, K. A., Stacy, E. A., Moyle, L. C., Garlovsky, M. D., Maulana, A., Kantelinen, A., Cacho, N. I., Schneemann, H., Domínguez, M., Dopman, E. B., Lohse, K., Rometsch, S. J., Comeault, A. A., Merrill, R. M., Scordato, E. S.C., Singhal, S., Pärssinen, V., Lackey, A. C. R., Kumar, S., Meier, J. I., Barton, N., Fraïsse, C., Ravinet, M., Kulmuni, J. 2024. Toward the integration of speciation research. Evolutionary Journal of the Linnean Society 3: kzae001.
 

Sunagawa, J., Park, H., Kim, K. S., Komorizono, R., Choi, S., Ramirez Torres, L., Woo, J., Jeong, Y. D., Hart, W.S., Thompson, R.N., Aihara, K., *Iwami, S., and *Yamaguchi, R. 2023. Isolation may select for earlier and higher peak viral load but shorter duration in SARS-CoV-2 evolution. Nature Communications 14: 7395.
Top 25 Nature Communications COVID-19 Articles of 2023
 

*Kumakura, D., Yamaguchi, R., Hara, A., and Nakaoka, S. 2023. Disentangling the growth curve of microbial culture. Journal of Theoretical Biology 111597.
 

Sunagawa, J., Komorizono, R., Park, H., Hart, W.S., Thompson, R.N., Makino, A., Tomonaga, K., *Iwami, S., and *Yamaguchi, R. 2023. Contact-number-driven virus evolution: A multi-level modeling framework for the evolution of acute or persistent RNA virus infection. PLOS Computational Biology 19: e1011173.
 

*Kyogoku, D., and Yamaguchi, R. 2023. Males and females contribute differently to the evolution of habitat segregation driven by hybridization. Journal of Evolutionary Biology 2023;00:1–14.
 

*Yamaguchi, R. Wiley B., and Otto, S.P. 2022. The phoenix hypothesis of speciation. Proc. Roy. Soc. B 289: 20221186
 

*Yamaguchi, R. 2022. Intermediate dispersal hypothesis of species diversity: new insights. Ecological Research 37, 301-315. (Award paper: the seventh Suzuki Award at the 66th Annual Meeting of the Ecological Society of Japan)
 

*Sunagawa, J., Yamaguchi, R., and Nakaoka, S. 2022. Evolving Neural Networks through Bio-inspired Parent Selection in Dynamic Environments. BioSystems 218, 104686.
 

*Matsubayashi, K. W., and Yamaguchi, R. 2022. Adaptive and non‐adaptive causes of radiation: Is adaptation a harsh mistress of diversity? Population Ecology 64, 93–94.
 

*MacPherson, A., Wang, S., Yamaguchi, R., Rieseberg, L.H., and Otto, S.P. 2022. Parental population range expansion before secondary contact promotes heterosis. The American Naturalist 200, E1-E15.
 

*Yamaguchi, R. and Matsubayashi, K.W. 2022. Reply to Kagawa’s comment: Quantifying mixture modes of evolutionary radiations. Population Ecology 64, 127–129.
 

*Matsubayashi, K.W. and Yamaguchi, R. 2022. The speciation view: Disentangling multiple causes of adaptive and nonadaptive radiation in terms of speciation. Population Ecology 64, 95–107.
Top cited article 2022-2023
 

*Yamaguchi, R., Iwasa, Y., and  Tachiki Y. 2021. Recurrent speciation rates on islands decline with species number. Proc. Roy. Soc. B  288: 20210255.
 

*Yamaguchi, R. and Otto, S.P. 2020. Insights from Fisher's geometric model on the likelihood of speciation under different histories of environmental change. Evolution 74: 1603-1619.
Top cited article 2020-2021
 

Lee, JH, Yamaguchi, R., Yokomizo, H., and * Nakamaru, M. 2020. Preservation of the value of rice paddy fields: Investigating how to prevent farmers from abandoning the fields by means of evolutionary game theory. Journal of Theoretical Biology 110247.
 

*Nakahara, T., Horita, J., Booton, R.D., and  Yamaguchi, R. 2020. Extra molting, cannibalism and pupal diapause under unfavorable growth conditions in Atrophaneura alcinous (Lepidoptera: Papilionidae). Entomological Science 23: 57-65.
 

*Yamaguchi, R., Yamanaka, T. and Liebhold, A.M. 2019. Consequences of hybridization during invasion on establishment success. Theoretical Ecology 1-9.
 

*Booton, R., Yamaguchi, R., and Iwasa, Y. 2019. A population model for diapausing multivoltine insects under asymmetric cannibalism. Population Ecology 61: 35-44.
 

*Yamaguchi, R., Suefuji, S., Odagiri K., Peggie D., and Yata O. 2018. A color pattern difference in the fifth instar larva of two subspecies of Faunis menado Hewitson (Lepidoptera, Nymphalidae). Lepidoptera Science 69: 67-73.
 

*Booton, RD, Yamaguchi, R., Marshall, J.A.R., Childs, D.Z., and Iwasa, Y. 2018. Interactions between immunotoxicants and parasite stress: implications for host health. Journal of Theoretical Biology 445: 120-127.
 

*Yamaguchi, R. and Iwasa, Y. 2017. A tipping point in parapatric speciation. Journal of Theoretical Biology 421: 81-92.
 

*Yamaguchi, R. and Iwasa, Y. 2017. Parapatric speciation in three islands: dynamics of Geographic configuration of allele sharing. Royal Society Open Science 4: 160819.
 

*Yamaguchi, R. , Suefuji, S., Odagiri K., and Yata O. 2016. The endemic Sulawesi amathusiine Faunis menado Hewitson (Lepidoptera, Nymphalidae) is divisible into two morphospecies. Lepidoptera Science 67: 12-21.
 

*Yamaguchi, R. and Iwasa, Y. 2016. Smallness of the number of incompatibility loci can facilitate parapatric speciation. Journal of Theoretical Biology 405: 36-45.
 

Yamaguchi, R. and *Iwasa, Y. 2015. Reproductive interference can promote recurrent parapatric speciation. Population Ecology 57: 343-346.
 

*Yamaguchi, R. and Iwasa, Y. 2013. Reproductive character displacement by the evolution of female mate choice. Evolutionary Ecology Research 15: 25-41.
 

*Yamaguchi, R. and Iwasa, Y. 2013. First passage time to allopatric speciation. Interface Focus 3: 20130026.